李少艇 副教授（青年百人有条件A）
所属学院：生物医药学院
科研方向：食源性致病微生物的遗传多样性和基因组流行病学，病原微生物的检测和分子分型，食品微生物和肠道微生物的宏基因组学研究
联系方式：shaoting.li@gdut.edu.cn
个人简述：
李少艇，博士，广东工业大学生物医药学院青年百人计划特聘副教授。毕业于美国佐治亚大学食品科学专业。致力于食品微生物学、生物信息学和基因组流行病学的相关研究工作，主要研究方向包括食源性致病微生物的遗传多样性和基因组流行病学，病原微生物的检测和分子分型，食品微生物和肠道微生物的宏基因组学研究等。在Nature Communications，Applied and Environmental Microbiology，Emerging Infectious Diseases，Food Microbiology，Food & Function等知名国际专业期刊上共发表SCI论文20多篇，其中包括第一作者SCI论文 9篇。
工作经历：
2022-至今，广东工业大学，副教授（青年百人有条件A）
2020-2021，美国佐治亚大学，博士后
2015-2016，深圳承启生物科技有限公司，生物信息学分析师
学习经历：
2016-2020，美国乔治亚大学，食品科学，博士
2012-2015，暨南大学，食品科学，硕士
2007-2012，暨南大学，食品质量与安全，学士
近年发表主要论文：
1. Li, S., He, Y., Mann, D. A., & Deng, X. (2021). Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks. Nature communications, 12, 5109. (JCR 1区，IF = 14.919)
2. Li, S., Mann, D. A., Zhang, S., Qi, Y., Meinersmann, R. J., & Deng, X. (2020). Microbiome-informed food safety and quality: Longitudinal consistency and cross-sectional distinctiveness of retail chicken breast microbiomes. Msystems, 5(5), e00589-20. (JCR 2区，IF = 6.496)
3. Li, S., Zhang, S., & Deng, X. (2020). GC content-associated sequencing bias caused by library preparation method may affect Salmonella serotype prediction using SeqSero2. Applied and environmental microbiology, 86(18), 00614-20. (JCR 2区，Top期刊，IF = 4.792)
4. Forghani, F.*, Li, S.*, Zhang, S., Mann, D. A., Deng, X., Den Bakker, H. C., & Diez-Gonzalez, F. (2020). Salmonella enterica and Escherichia coli in wheat flour: Detection and serotyping by a quasimetagenomic approach assisted by magnetic capture, multiple-displacement amplification, and real-time sequencing. Applied and environmental microbiology, 86(13), e00097-20. (*共同第一作者，JCR 2区，Top期刊，IF = 4.792)
5. Li, S., Zhang, S., Baert, L., Jagadeesan, B., Ngom-Bru, C., Griswold, T., Katz, L. S., Carleton, H. A. & Deng, X. (2019). Implications of mobile genetic elements for Salmonella enterica single-nucleotide polymorphism subtyping and source tracking investigations. Applied and environmental microbiology, 85(24), e01985-19. (JCR 2区，Top期刊，IF = 4.792)
6. Hyeon, J. Y.*, Li, S.*, Mann, D. A., Zhang, S., Li, Z., Chen, Y., & Deng, X. (2018). Quasimetagenomics-based and real-time-sequencing-aided detection and subtyping of Salmonella enterica from food samples. Applied and environmental microbiology, 84(4), e02340-17. (*共同第一作者，JCR 2区，Top期刊，IF = 4.792)
7. Li, S., Yingyi, G., Chen, L., Lijuan, G., Ou, S., & Peng, X. (2015). Lean rats gained more body weight from a high-fructooligosaccharide diet. Food & function, 6(7), 2315-2321. (JCR 1区，IF = 5.396)
8. Li, S., Zhang, C., Gu, Y., Chen, L., Ou, S., Wang, Y., & Peng, X. (2015). Lean rats gained more body weight than obese ones from a high-fibre diet. British Journal of Nutrition, 114(8), 1188-1194. (JCR 2区，Top期刊，IF = 3.718)
9. Li, S., Gao, L., Chen, L., Ou, S., & Peng, X. (2015). Continuously ingesting fructooligosaccharide can't maintain rats’ gut Bifidobacterium at a high level. Journal of food science, 80(11), M2530-M2534. (JCR 2区，Top期刊，IF = 3.167)
10. Zhang, S., Li, S., Gu, W., Den Bakker, H., Boxrud, D., Taylor, A., Roe, C., Driebe, E., Engelthaler, D. M., Allard, M., Brown, E., McDermott, P., Zhao, S., Bruce, B. B., Trees, E., Fields, P. I. & Deng, X. (2019). Zoonotic source attribution of Salmonella enterica serotype Typhimurium using genomic surveillance data, United States. Emerging infectious diseases, 25(1), 82. (JCR 1区， IF = 6.883)
11. Townsend, A., Li, S., Mann, D. A., & Deng, X. (2020). A quasimetagenomics method for concerted detection and subtyping of Salmonella enterica and E. coli O157: H7 from romaine lettuce. Food microbiology, 92, 103575. (JCR 1区，Top期刊，IF = 5.516)
12. Zhang, S., Den Bakker, H. C., Li, S., Chen, J., Dinsmore, B. A., Lane, C., Lauer, A. C., Fields, P. I. & Deng, X. (2019). SeqSero2: Rapid and improved Salmonella serotype determination using whole-genome sequencing data. Applied and environmental microbiology, 85(23), e01746-19. (JCR 2区，Top期刊，IF = 4.792)
13. Fu, Y., M’ikanatha, N. M., Lorch, J. M., Blehert, D. S., Berlowski-Zier, B., Whitehouse, C. A., Li, S., Deng, X., Smith, J. C., Shariat, N. W., Nawrocki, E. M. & Dudley, E. G. (2022). Salmonella enterica Serovar Typhimurium Isolates from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type. Applied and environmental microbiology, 88(6), e01979-21. (JCR 2区，Top期刊，IF = 4.792)
14. Xu, F., Ge, C., Li, S., Tang, S., Wu, X., Luo, H., Deng, X., Zhang, G., Stevenson A. & Baker, R. C. (2021). Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34+. International Journal of Food Microbiology, 346, 109167. (JCR 1区TOP，IF = 5.277)
15. Wu, X., Luo, H., Xu, F., Ge, C., Li, S., Deng, X., Wiedmann, M., Baker, R. C., Stevenson, A., Zhang, G. & Tang, S. (2021). Evaluation of salmonella serotype prediction with multiplex nanopore sequencing. Frontiers in microbiology, 12, 380. (JCR 2区TOP，IF = 5.640)
16. Hyeon, J. Y., Li, S., Mann, D. A., Zhang, S., Kim, K. J., Lee, D. H., Deng, X. & Song, C. S. (2021). Whole-genome sequencing analysis of Salmonella enterica serotype enteritidis isolated from poultry sources in South Korea, 2010–2017. Pathogens, 10(1), 45. (JCR 3区，IF = 3.492)
17. Xu, F., Ge, C., Luo, H., Li, S., Wiedmann, M., Deng, X., Zhang, G., Stevenson A., Baker, R. C. & Tang, S. (2020). Evaluation of real-time nanopore sequencing for Salmonella serotype prediction. Food microbiology, 89, 103452. (JCR 1区，Top期刊，IF = 5.516)
18. Diep, B., Barretto, C., Portmann, A. C., Fournier, C., Karczmarek, A., Voets, G., Li, S., Deng, X. & Klijn, A. (2019). Salmonella serotyping; comparison of the traditional method to a microarray-based method and an in silico platform using whole genome sequencing data. Frontiers in microbiology, 2554. (JCR 2区TOP，IF = 5.640)
19. Peng, X., Zhang, Z., Zhang, N., Liu, L., Li, S., & Wei, H. (2014). In vitro catabolism of quercetin by human fecal bacteria and the antioxidant capacity of its catabolites. Food & nutrition research, 58(1), 23406. (JCR 3区，IF = 3.240)
20. Zhang, Z., Peng, X., Li, S., Zhang, N., Wang, Y., & Wei, H. (2014). Isolation and identification of quercetin degrading bacteria from human fecal microbes. PLOS one, 9(3), e90531. (JCR 3区，IF = 3.894)
21. Peng, X., Li, S., Luo, J., Wu, X., & Liu, L. (2013). Effects of dietary fibers and their mixtures on short chain fatty acids and microbiota in mice’ guts. Food & function, 4(6), 932-938. (JCR 1区TOP，IF = 5.396)
基金项目：
1. Salmonella source attribution by machine learning and whole genome sequencing. [美国食品药品监督管理局基金项目，20万(美元)，2020-2022，参与]
2. Salmonella Serotyping Using Genome Sequencing Data. [美国食品药品监督管理局基金项目，20万(美元)，2017-2019，参与]
